JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC47_chr1_3773559_3801498	0/0	a0003	583	1	0	0	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0004	583	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0005	583	1	0	0	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0006	583	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0007	583	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0008	583	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC49_chr15_70887826_71058658	1/1	a0001	686	173	59	36	62	1	13	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	a0002	685	86	10	24	46	1	5	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	a0003	686	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	a0004	686	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	a0005	685	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC4B_chr19_50511892_50573435	1/1	a0001	713	283	71	58	102	10	40	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	a0002	713	74	17	19	22	6	10	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	a0003	713	1	1	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	a0004	713	1	0	1	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	a0005	713	1	1	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4C_chr11_40109209_41464652	0/0	a0001	640	47	39	4	2	0	2	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4C_chr11_40109209_41464652	0/0	a0002	640	1	1	0	0	0	0	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4_chr7_128022071_128036437	1/1	a0001	653	373	94	73	146	16	42	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	a0002	653	4	0	2	0	2	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	a0003	653	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC51_chr11_72075850_72101895	1/1	a0001	192	335	89	58	142	10	34	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	a0002	192	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC52_chr1_165539000_165568957	1/1	a0001	313	336	88	64	127	15	40	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	a0002	313	12	8	1	0	1	2	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	a0003	313	1	0	0	1	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	a0004	313	1	0	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC53_chr1_74464376_74517611	0/0	a0000	0	2	0	0	2	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/1	a0001	1247	150	33	24	63	7	22	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	1/0	a0002	1247	71	5	17	25	8	15	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0003	1247	43	8	2	32	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0004	1247	31	19	1	7	0	4	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0005	1247	7	7	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0006	1247	6	6	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0007	1247	6	0	0	6	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0008	1247	5	0	0	5	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0009	1247	5	5	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0010	1247	4	2	2	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0011	1247	2	2	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0012	1247	1	0	0	0	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0013	1247	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0014	1247	1	0	1	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0015	1247	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0016	1247	1	0	1	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0017	1247	1	0	0	1	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0018	1247	1	0	0	0	1	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0019	1247	1	0	0	1	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0020	1247	1	0	0	0	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	a0021	1247	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC55_chr11_57176953_57196717	1/1	a0001	298	399	92	72	177	14	42	copy fasta	LRRC55	chr11	57176953	57196717