JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC55_chr11_57176953_57196717	0/0	a0002	298	31	0	8	17	4	2	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	a0003	298	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	a0004	298	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC56_chr11_532527_559912	0/0	a0001	542	207	32	39	102	10	24	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/1	a0002	542	66	24	19	14	5	3	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0003	542	48	19	7	11	1	10	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0004	542	18	5	1	9	1	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0005	542	9	0	0	9	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0006	542	9	9	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0007	542	5	0	4	0	1	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0008	542	3	0	3	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0009	542	2	0	2	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0010	542	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0011	542	2	1	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0012	542	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0013	542	2	0	0	0	0	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0014	542	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0015	542	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0016	542	1	0	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0017	542	1	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0018	542	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0019	542	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0020	542	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0021	542	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0022	542	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0023	542	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0024	542	1	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	a0025	542	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC57_chr15_42532829_42553793	0/0	a0000	0	1	0	0	0	1	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	1/1	a0001	239	354	90	64	143	11	44	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	a0002	239	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC58_chr3_120319509_120354354	1/1	a0001	371	373	92	73	145	16	45	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	a0002	371	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	a0003	371	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	a0004	171	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC59_chr17_50376238_50402523	1/1	a0001	307	359	87	78	136	18	38	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	a0002	307	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC61_chr7_150318355_150343156	1/0	a0001	259	253	69	41	109	6	27	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/1	a0002	259	119	22	15	68	4	9	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0003	259	5	0	0	5	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0004	259	4	0	0	4	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0005	259	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0006	259	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0007	259	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0008	259	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	a0009	259	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC63_chr13_46206928_46282115	1/1	a0001	587	265	37	51	131	16	28	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0002	587	54	5	9	36	0	4	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0003	587	13	12	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0004	587	12	1	3	7	0	1	copy fasta	LRRC63	chr13	46206928	46282115