JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC63_chr13_46206928_46282115	0/0	a0005	587	8	4	2	0	0	2	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0006	587	6	6	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0007	587	6	5	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0008	587	5	0	0	5	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0009	587	5	5	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0010	587	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0011	587	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0012	587	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0013	587	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0014	587	1	0	0	0	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0015	587	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0016	587	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0017	587	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	a0018	587	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC66_chr4_51988652_52025363	1/1	a0001	880	314	69	62	132	16	33	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0002	880	6	6	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0003	880	3	3	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0004	880	3	3	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0005	880	2	1	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0006	880	2	2	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0007	880	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0008	84	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0009	880	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0010	875	1	0	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0011	880	1	0	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	a0012	880	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC69_chr8_91097619_91224257	1/1	a0001	347	184	71	28	67	6	10	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	a0002	347	133	17	22	74	6	14	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	a0003	347	1	0	0	1	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC70_chr5_62573819_62586446	1/1	a0001	622	444	88	77	217	16	44	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	a0002	622	2	0	0	0	0	2	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	a0003	622	2	2	0	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	a0004	622	1	0	0	1	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	a0005	622	1	0	1	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC71_chr1_156915632_156938094	1/1	a0001	559	246	50	51	98	12	33	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0002	559	102	14	14	63	3	8	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0003	559	31	17	12	1	0	1	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0004	559	8	7	1	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0005	559	3	2	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0006	559	2	0	0	0	0	2	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0007	559	2	2	0	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0008	559	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0009	559	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0010	559	1	0	0	0	1	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0011	268	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0012	559	1	0	0	0	0	1	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0013	555	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0014	559	1	0	0	0	0	1	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	a0015	559	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC72_chr7_16521825_16586568	1/1	a0001	287	365	94	65	145	13	46	copy fasta	LRRC72	chr7	16521825	16586568