JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC72_chr7_16521825_16586568	0/0	a0002	287	37	3	7	24	3	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	a0003	287	3	1	2	0	0	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	a0004	287	3	0	0	3	0	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	a0005	287	2	0	0	0	0	2	copy fasta	LRRC72	chr7	16521825	16586568
LRRC73_chr6_43501968_43515346	1/1	a0001	316	360	96	74	132	16	40	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	a0002	316	3	3	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	a0003	316	1	0	0	0	0	1	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	a0004	316	1	0	0	0	0	1	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	a0005	316	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC74A_chr14_76821408_76875304	1/0	a0001	471	257	65	40	114	8	29	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/1	a0002	471	69	16	23	14	7	8	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0003	471	55	3	7	41	2	2	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0004	471	8	5	1	1	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0005	471	7	0	0	7	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0006	471	4	4	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0007	471	2	1	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0008	471	1	0	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0009	471	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0010	471	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0011	471	1	0	0	1	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0012	471	1	0	0	0	1	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	a0013	471	1	0	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74B_chr22_21040946_21069168	1/1	a0001	392	431	84	77	207	15	46	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0002	392	9	3	3	0	3	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0003	392	5	3	2	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0004	392	2	0	0	2	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0005	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0006	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0007	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0008	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0009	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0010	392	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	a0011	392	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC75A_chr17_16436577_16497193	1/1	a0001	344	331	95	70	106	16	42	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	a0002	344	8	0	8	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	a0003	344	3	3	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75B_chr22_24580635_24598073	1/1	a0001	315	432	74	77	218	18	43	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0002	315	8	7	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0003	315	7	7	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0004	315	3	3	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0005	315	3	3	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0006	315	2	0	0	0	0	2	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0007	315	2	0	0	2	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0008	315	1	0	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0009	315	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0010	315	1	0	0	0	0	1	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0011	315	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	a0012	315	1	0	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC7_chr1_69562922_70149364	1/1	a0001	1575	98	37	16	26	4	13	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0002	1575	3	2	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364