JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC7_chr1_69562922_70149364	0/0	a0003	1575	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0004	1575	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0005	1575	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0006	1575	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0007	1575	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	a0008	1575	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC8A_chr9_128877133_128923039	1/1	a0001	810	343	90	58	138	16	39	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	a0002	810	1	0	0	0	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8B_chr1_89519829_89602861	1/1	a0001	803	307	85	51	115	14	40	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	a0002	803	10	0	4	6	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	a0003	803	5	5	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	a0004	803	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	a0005	803	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8C_chr1_89628120_89724533	0/1	a0001	803	213	79	33	74	7	19	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0002	803	42	5	8	23	1	5	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	1/0	a0003	803	5	4	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0004	803	3	0	1	2	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0005	803	2	1	1	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0006	803	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0007	803	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	a0008	803	1	0	1	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8D_chr1_89816032_89941611	1/1	a0001	858	208	74	44	52	6	30	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	a0002	858	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	a0003	858	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8E_chr19_7883510_7907016	1/1	a0001	796	258	49	48	112	12	35	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0002	796	72	13	17	33	4	5	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0003	796	26	10	0	16	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0004	796	14	3	1	5	1	4	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0005	796	6	6	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0006	796	4	4	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0007	796	2	0	1	0	0	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0008	796	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0009	796	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0010	796	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0011	796	1	0	0	0	0	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0012	796	1	0	0	0	1	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0013	796	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0014	796	1	0	1	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	a0015	796	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC9_chr14_59915144_60071817	1/1	a0001	1494	280	61	54	125	10	28	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0002	1494	21	0	0	21	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0003	1494	4	0	0	4	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0004	1494	3	0	0	2	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0005	1494	2	2	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0006	1494	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0007	1494	2	2	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0008	1037	2	0	0	0	2	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0009	1494	1	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0010	1494	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0011	1494	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817