JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC9_chr14_59915144_60071817	0/0	a0012	1494	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0013	1494	1	0	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	a0014	1494	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRCC1_chr8_85102238_85151080	1/1	a0001	1032	230	34	39	118	6	31	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0002	1032	41	27	3	10	0	1	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0003	1032	14	0	4	4	1	5	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0004	1032	12	12	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0005	1032	12	5	5	0	1	1	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0006	1032	4	4	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0007	1032	3	3	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0008	1032	3	3	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0009	1032	1	0	1	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0010	1032	1	0	0	1	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0011	1032	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0012	1032	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0013	1032	1	0	0	1	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0014	1032	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	a0015	1032	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRD1_chr7_92139842_92184142	1/1	a0001	860	211	34	28	128	4	15	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0002	860	122	50	25	35	2	10	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0003	860	6	0	0	6	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0004	860	4	0	0	4	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0005	860	3	3	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0006	860	2	0	2	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0007	860	2	2	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0008	860	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0009	860	1	0	0	0	0	1	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0010	860	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0011	860	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0012	860	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0013	860	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0014	860	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0015	860	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0016	860	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	a0017	860	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRFIP1_chr2_237622587_237786643	1/1	a0001	640	254	81	39	93	7	32	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	a0002	640	20	0	1	13	2	4	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	a0003	640	1	0	0	0	1	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	a0004	640	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP2_chr3_37047626_37179582	1/0	a0001	721	252	71	51	88	10	31	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/1	a0002	721	3	0	2	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0003	721	3	2	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0004	721	2	2	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0005	721	2	2	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0006	721	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0007	721	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0008	721	1	0	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0009	721	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0010	721	1	0	0	0	0	1	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	a0011	721	1	0	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582