JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRIQ1_chr12_85031351_85250105	1/1	a0001	1722	154	54	20	61	7	10	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0002	1720	32	2	8	19	2	1	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0003	1720	14	2	7	0	1	4	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0004	1720	6	6	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0005	1722	5	0	2	3	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0006	1722	4	2	1	0	0	1	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0007	1722	3	0	2	0	1	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0008	1722	2	2	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0009	1722	1	0	0	1	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0010	1722	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0011	1722	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0012	1722	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0013	1722	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0014	1722	1	0	1	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0015	1722	1	0	1	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	a0016	1720	1	0	0	0	1	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ3_chr1_74021015_74203176	0/1	a0001	624	153	34	40	52	9	17	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	1/0	a0002	624	48	26	5	7	1	8	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0003	624	23	0	7	13	0	3	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0004	624	16	1	4	8	0	3	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0005	624	10	8	2	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0006	624	10	9	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0007	624	3	0	0	3	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0008	624	2	1	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0009	624	1	0	0	0	1	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0010	624	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0011	624	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0012	624	1	0	0	0	0	1	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0013	624	1	1	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0014	624	1	0	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0015	624	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0016	624	1	0	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	a0017	624	1	0	0	0	1	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ4_chr3_169807870_169842773	1/1	a0001	560	329	77	48	165	11	26	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0002	560	19	0	8	5	3	3	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0003	560	17	11	2	0	0	4	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0004	560	11	1	3	6	0	1	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0005	560	3	0	3	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0006	560	2	2	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0007	560	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0008	560	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0009	560	1	0	0	1	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0010	560	1	0	0	1	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	a0011	560	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRK1_chr15_100914357_101083257	1/0	a0001	2015	201	71	37	61	8	23	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/1	a0002	2015	86	6	21	39	3	16	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0003	2015	7	0	0	6	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0004	2015	7	6	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0005	2015	6	0	0	6	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0006	2015	3	1	2	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257