JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRK1_chr15_100914357_101083257	0/0	a0007	2015	2	2	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0008	2015	2	0	1	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0009	2015	2	0	0	2	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0010	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0011	1161	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0012	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0013	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0014	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0015	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0016	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0017	2015	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0018	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0019	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0020	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0021	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0022	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0023	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0024	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0025	2015	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0026	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0027	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0028	2015	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0029	2015	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0030	2015	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	a0031	2015	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK2_chr12_40219997_40374285	0/1	a0001	2527	139	24	27	78	1	8	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0002	2527	84	10	17	42	4	11	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0003	2527	51	18	10	8	6	9	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0004	2527	27	3	4	18	0	2	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0005	2527	14	0	4	6	0	4	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	1/0	a0006	2527	11	9	1	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0007	2527	7	1	0	5	0	1	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0008	2527	6	6	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0009	2527	5	5	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0010	2527	3	3	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0011	2527	3	3	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0012	2527	2	0	2	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0013	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0014	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0015	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0016	2527	2	0	1	0	0	1	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0017	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0018	2527	2	0	1	0	1	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0019	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0020	2527	2	0	2	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0021	2527	2	0	0	2	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0022	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0023	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0024	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0025	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285