JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRK2_chr12_40219997_40374285	0/0	a0026	2527	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0027	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0028	2527	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0029	2527	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0030	2527	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0031	2527	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0032	2527	1	0	1	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	a0033	2527	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRN1_chr3_3794431_3854834	1/1	a0001	716	398	91	64	193	11	37	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0002	716	7	0	0	7	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0003	716	7	6	1	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0004	716	5	0	3	0	2	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0005	716	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0006	716	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0007	716	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0008	716	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	a0009	716	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN2_chr1_204612170_204690738	1/1	a0001	713	254	81	39	99	12	21	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0002	713	64	2	7	42	3	10	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0003	713	4	0	3	0	1	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0004	713	2	0	0	1	0	1	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0005	713	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0006	713	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0007	713	1	0	1	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	a0008	713	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN3_chr7_111086127_111130454	1/1	a0001	708	253	77	51	86	10	27	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0002	708	6	0	0	6	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0003	708	4	1	2	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0004	708	4	3	0	0	0	1	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0005	708	1	0	1	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0006	708	1	0	0	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	a0007	708	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN4CL_chr11_62681406_62694530	1/1	a0001	238	347	92	70	139	10	34	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	a0002	238	1	0	0	1	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4_chr20_6035546_6059060	1/0	a0001	740	173	35	32	78	7	20	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/1	a0002	740	93	2	18	62	2	8	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0003	740	57	7	23	21	1	5	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0004	740	15	12	0	1	0	2	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0005	740	15	15	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0006	740	10	0	1	9	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0007	740	7	0	0	7	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0008	740	6	6	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0009	740	5	5	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0010	740	4	0	0	4	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0011	740	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0012	740	3	3	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0013	740	2	2	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0014	740	2	2	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0015	740	2	0	0	2	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0016	740	1	0	0	1	0	0	copy fasta	LRRN4	chr20	6035546	6059060