JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRWD1_chr7_102459984_102478168	0/0	a0009	647	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0010	647	1	1	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0011	647	1	1	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0012	647	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0013	647	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0014	647	1	0	0	0	0	1	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0015	647	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LSAMP_chr3_115797374_116450487	0/0	a0001	338	103	49	26	16	2	10	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	a0002	338	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSG1_chr3_194635791_194677191	0/1	a0001	658	246	24	51	140	6	24	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	1/0	a0002	658	106	51	21	22	4	7	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0003	658	40	14	7	9	0	10	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0004	658	3	2	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0005	658	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0006	658	2	0	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0007	658	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0008	658	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0009	658	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0010	658	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0011	658	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0012	658	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0013	658	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0014	658	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	a0015	658	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSM10_chr1_36388436_36402908	1/1	a0001	123	429	95	74	190	18	50	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	a0002	123	2	0	0	2	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	a0003	123	1	1	0	0	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM11_chr5_157738712_157765709	1/1	a0001	360	423	88	86	186	14	47	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0002	360	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0003	360	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0004	360	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0005	360	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0006	360	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0007	360	1	0	0	0	0	1	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	a0008	360	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM12_chr17_44029328_44071671	1/1	a0001	195	294	84	62	114	8	24	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	a0002	195	4	4	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM14A_chr19_34167504_34234288	0/1	a0001	463	264	72	58	83	18	32	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	a0002	463	42	21	13	3	0	5	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	a0003	463	8	1	3	4	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	a0004	463	1	0	0	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14B_chr20_62117475_62140374	1/1	a0001	385	333	87	70	130	8	36	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	a0002	385	7	1	6	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM1_chr8_38158339_38181493	1/1	a0001	133	401	89	72	184	16	38	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	a0002	133	1	1	0	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM2_chr6_31792396_31811966	0/1	a0001	95	427	96	86	186	18	40	copy fasta	LSM2	chr6	31792396	31811966
LSM3_chr3_14173817_14206122	1/1	a0001	102	395	95	72	168	16	42	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	a0002	102	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM4_chr19_18301236_18328076	1/1	a0001	139	394	96	66	168	16	46	copy fasta	LSM4	chr19	18301236	18328076
LSM5_chr7_32480338_32495380	1/1	a0001	91	444	98	74	204	16	50	copy fasta	LSM5	chr7	32480338	32495380