JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LSM6_chr4_146170718_146196535	1/1	a0001	80	375	79	66	170	18	40	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	a0002	80	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM7_chr19_2316521_2333586	1/1	a0001	103	435	98	78	196	14	47	copy fasta	LSM7	chr19	2316521	2333586
LSM7_chr19_2316521_2333586	0/0	a0002	49	1	0	0	0	0	1	copy fasta	LSM7	chr19	2316521	2333586
LSM8_chr7_118179164_118209035	1/1	a0001	96	414	88	68	200	12	44	copy fasta	LSM8	chr7	118179164	118209035
LSMEM1_chr7_112475991_112496062	1/1	a0001	131	403	92	78	166	18	47	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	a0002	131	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM2_chr3_50274087_50293114	1/1	a0001	164	372	88	66	169	14	33	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	a0002	164	1	0	0	0	0	1	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	a0003	164	1	0	0	1	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSP1_chr11_1848084_1897263	0/0	a0001	339	147	18	39	68	8	14	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	1/1	a0002	339	143	36	27	50	7	21	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0003	339	63	24	12	23	1	3	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0004	339	2	2	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0005	339	2	2	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0006	339	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0007	339	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	a0008	339	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSR_chr19_35244002_35272964	1/0	a0001	601	189	40	19	118	3	8	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/1	a0002	602	157	45	33	47	8	23	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0003	602	83	7	23	36	3	14	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0004	601	3	3	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0005	602	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0006	601	1	0	0	0	0	1	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0007	602	1	0	0	1	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0008	601	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0009	602	1	0	1	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	a0010	602	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSS_chr21_46183446_46233774	0/1	a0001	732	190	51	34	80	6	18	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	1/0	a0002	732	86	5	19	40	6	15	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0003	732	45	9	8	14	2	12	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0004	732	11	11	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0005	732	9	2	5	0	1	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0006	732	3	2	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0007	732	3	3	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0008	732	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0009	732	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0010	732	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0011	732	1	0	0	0	1	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0012	732	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0013	732	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0014	732	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0015	732	1	1	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	a0016	732	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LST1_chr6_31581277_31593909	0/1	a0001	97	420	81	77	197	18	46	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	a0002	97	1	1	0	0	0	0	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	a0003	97	1	0	1	0	0	0	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	a0004	97	1	0	0	1	0	0	copy fasta	LST1	chr6	31581277	31593909
LTA4H_chr12_95995753_96040587	1/1	a0001	611	355	85	62	150	16	40	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	a0002	611	9	9	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587