JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LTBP2_chr14_74493183_74617237	0/0	a0015	1821	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0016	1821	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0017	1821	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP3_chr11_65533559_65563359	1/0	a0001	1303	236	78	22	107	8	20	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/1	a0002	1305	23	1	7	9	3	2	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0003	192	22	3	4	12	0	3	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0004	1303	14	1	2	6	1	4	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0005	1300	7	7	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0006	1304	5	2	1	2	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0007	1303	2	0	0	2	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0008	1305	2	2	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0009	1303	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0010	1303	1	0	0	0	0	1	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0011	1303	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0012	1305	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	a0013	194	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP4_chr19_40596369_40634818	1/0	a0001	1557	135	18	32	63	7	14	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/1	a0002	1557	116	29	18	45	4	19	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0003	1557	27	8	4	13	0	2	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0004	1557	11	9	2	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0005	1557	10	10	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0006	1557	6	3	1	2	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0007	1557	3	3	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0008	1557	3	3	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0009	1557	3	1	1	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0010	1557	3	3	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0011	1557	2	0	0	0	0	2	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0012	1557	2	0	1	0	1	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0013	1557	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0014	1557	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0015	1557	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0016	1557	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0017	1557	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0018	1557	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0019	1557	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0020	1557	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0021	1557	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0022	1557	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0023	1557	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0024	1557	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0025	1557	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0026	1557	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	a0027	1557	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBR_chr12_6379162_6396566	1/1	a0001	435	437	84	74	214	15	48	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	a0002	435	6	6	0	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	a0003	435	6	6	0	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	a0004	421	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	a0005	435	1	0	0	0	1	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	a0006	435	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTB_chr6_31575558_31587424	0/1	a0001	244	398	78	68	191	18	42	copy fasta	LTB	chr6	31575558	31587424