JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LTB_chr6_31575558_31587424	0/0	a0002	244	8	1	2	5	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	a0003	244	2	2	0	0	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	a0004	244	1	0	0	1	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	a0005	244	1	1	0	0	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	a0006	244	1	0	0	1	0	0	copy fasta	LTB	chr6	31575558	31587424
LTC4S_chr5_179788986_179801647	1/1	a0001	150	415	88	80	189	14	42	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	a0002	150	2	2	0	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	a0003	150	1	0	0	1	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTF_chr3_46430645_46469905	0/0	a0001	711	174	51	31	69	6	17	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/1	a0002	711	74	2	20	43	2	6	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0003	711	45	2	10	19	6	8	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0004	711	38	11	6	14	0	7	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0005	711	35	0	0	34	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0006	711	23	1	4	16	1	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0007	711	17	16	1	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0008	711	3	3	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0009	711	3	0	0	3	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	1/0	a0010	710	2	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0011	711	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0012	711	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0013	711	1	0	0	0	1	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0014	711	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0015	711	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0016	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0017	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0018	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0019	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0020	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0021	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0022	711	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0023	711	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	a0024	711	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTK_chr15_41498637_41518827	1/1	a0001	864	319	85	62	120	12	38	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0002	864	70	9	3	56	0	2	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0003	864	16	0	7	6	2	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0004	864	10	0	0	10	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0005	864	3	0	3	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0006	864	3	0	0	1	0	2	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0007	864	2	0	1	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0008	864	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0009	342	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0010	864	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0011	864	1	0	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0012	864	1	0	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0013	864	1	0	0	0	0	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	a0014	864	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTN1_chr21_28923144_28997877	0/1	a0001	1766	156	52	23	63	3	14	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	1/0	a0002	1766	84	12	20	35	4	12	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0003	1766	59	0	10	48	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0004	1766	40	3	5	32	0	0	copy fasta	LTN1	chr21	28923144	28997877