JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LTN1_chr21_28923144_28997877	0/0	a0005	1766	21	3	6	11	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0006	1766	12	1	3	0	1	7	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0007	1766	9	7	2	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0008	1766	5	5	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0009	1766	5	1	2	0	2	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0010	1766	3	3	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0011	1766	2	1	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0012	1766	2	2	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0013	1766	1	0	0	0	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0014	1766	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0015	1766	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0016	407	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0017	1766	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	a0018	1766	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTO1_chr11_69660563_69680353	1/1	a0001	137	316	88	68	100	18	40	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	a0002	137	10	10	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTV1_chr6_143838338_143868812	0/0	a0001	475	405	87	68	198	6	46	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	a0002	475	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	a0003	475	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	a0004	283	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	a0005	475	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	a0006	475	1	1	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LUC7L2_chr7_139354894_139428454	1/1	a0001	392	272	82	42	106	12	28	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	a0002	392	4	0	0	4	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L3_chr17_50714603_50761219	1/1	a0001	432	391	89	74	178	12	36	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	a0002	432	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L_chr16_183990_234449	1/1	a0001	371	346	88	62	144	12	38	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	a0002	371	2	2	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	a0003	371	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	a0004	371	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUM_chr12_91097629_91116494	1/1	a0001	338	379	95	61	173	12	36	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	a0002	338	2	0	0	2	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	a0003	338	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	a0004	338	1	0	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	a0005	338	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LURAP1L_chr9_12770020_12828060	0/1	a0001	231	277	41	65	135	9	26	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	1/0	a0002	228	101	26	3	49	5	17	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0003	230	23	13	8	0	2	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0004	229	6	6	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0005	231	3	3	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0006	230	2	2	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0007	230	2	2	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0008	228	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0009	232	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0010	233	1	0	0	0	0	1	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	a0011	231	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1_chr1_46198334_46226256	1/1	a0001	239	344	85	63	144	13	37	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	a0002	239	5	0	1	0	2	2	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	a0003	239	3	0	2	0	1	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	a0004	239	2	2	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256