JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LURAP1_chr1_46198334_46226256	0/0	a0005	239	1	1	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	a0006	239	1	0	0	0	0	1	copy fasta	LURAP1	chr1	46198334	46226256
LUZP1_chr1_23079030_23173856	0/1	a0001	1076	164	23	28	90	5	17	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	1/0	a0002	1076	76	6	19	36	1	13	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0003	1076	22	19	3	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0004	1076	15	13	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0005	1076	8	4	4	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0006	1076	8	6	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0007	1076	6	5	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0008	1076	6	6	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0009	1076	5	0	2	3	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0010	1076	3	0	0	3	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0011	1064	2	0	0	2	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0012	1076	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0013	1076	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0014	1076	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0015	1076	1	0	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0016	1076	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0017	1076	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	a0018	1076	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP2_chr11_24492053_25087638	0/0	a0001	346	81	53	11	9	3	5	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	a0002	346	31	6	6	11	1	7	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	a0003	346	2	2	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	a0004	346	1	0	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	a0005	346	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP4_chrX_115284715_115312563	1/1	a0001	313	265	64	41	121	9	28	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0002	313	9	8	1	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0003	313	2	0	2	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0004	233	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0005	320	1	0	1	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0006	313	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	a0007	313	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LVRN_chr5_115957475_116032606	0/1	a0001	990	243	51	46	110	10	25	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	1/0	a0002	990	69	1	17	38	1	11	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0003	990	35	11	4	18	0	2	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0004	990	23	14	1	5	0	3	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0005	990	12	5	0	7	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0006	990	8	0	4	0	1	3	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0007	990	8	0	0	8	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0008	990	3	0	0	3	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0009	990	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0010	759	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0011	990	2	0	0	2	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0012	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0013	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0014	990	1	0	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0015	990	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0016	990	1	0	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0017	990	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0018	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606