JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LVRN_chr5_115957475_116032606	0/0	a0019	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0020	990	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0021	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	a0022	990	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LXN_chr3_158661414_158677648	0/0	a0001	222	216	60	31	94	8	23	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	1/1	a0002	222	186	17	31	104	7	25	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0003	222	16	16	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0004	222	2	1	1	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0005	222	2	0	0	0	2	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0006	222	2	2	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0007	222	1	0	0	0	1	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	a0008	222	1	0	1	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LY6D_chr8_142779882_142791539	1/1	a0001	128	292	48	48	162	11	21	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	a0002	128	138	42	30	40	7	19	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	a0003	128	2	2	0	0	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	a0004	128	1	0	0	0	0	1	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	a0005	128	1	0	0	0	0	1	copy fasta	LY6D	chr8	142779882	142791539
LY6E_chr8_143013529_143027409	0/1	a0001	131	374	92	74	155	14	38	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	a0002	131	3	2	0	1	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6G5B_chr6_31664976_31678546	0/1	a0001	201	310	47	66	149	13	34	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0002	201	51	24	5	20	1	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0003	201	30	11	5	3	3	8	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0004	201	19	7	2	9	0	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0005	77	2	0	0	0	0	2	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0006	201	1	0	0	1	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0007	120	1	0	0	0	1	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	a0008	201	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5C_chr6_31671684_31686067	0/1	a0001	150	412	91	77	189	15	39	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	a0002	150	7	1	1	2	1	2	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	a0003	150	4	0	0	1	0	3	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G6C_chr6_31713648_31726746	0/1	a0001	125	384	88	81	154	18	42	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	a0002	125	12	0	0	12	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	a0003	125	2	2	0	0	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	a0004	125	1	0	1	0	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6D_chr6_31710348_31722919	0/1	a0001	133	352	71	72	149	17	42	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	a0002	133	42	17	6	17	1	1	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	a0003	133	3	3	0	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	a0004	133	2	0	2	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	a0005	133	1	0	0	0	0	1	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	a0006	133	1	1	0	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6F_chr6_31701866_31715679	0/1	a0001	297	242	37	47	111	13	33	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0002	297	73	7	18	43	1	4	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0003	297	46	23	5	17	1	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0004	297	43	22	7	5	3	6	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0005	297	15	2	0	12	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0006	297	3	1	1	0	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0007	297	1	1	0	0	0	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0008	297	1	0	0	0	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	a0009	297	1	1	0	0	0	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6H_chr8_143152916_143165321	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LY6H	chr8	143152916	143165321