JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LY6H_chr8_143152916_143165321	0/1	a0001	161	442	98	84	193	16	50	copy fasta	LY6H	chr8	143152916	143165321
LY6K_chr8_142695111_142710127	1/1	a0001	165	420	82	68	212	14	42	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	a0002	165	2	0	0	0	0	2	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	a0003	165	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	a0004	165	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	a0005	165	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	a0006	165	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6L_chr8_143075630_143088486	1/1	a0001	138	424	88	79	198	14	43	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	a0002	138	3	3	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	a0003	138	1	0	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	a0004	138	1	1	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	a0005	138	1	0	0	0	0	1	copy fasta	LY6L	chr8	143075630	143088486
LY75_chr2_159798355_159909756	0/0	a0001	1722	54	13	2	33	3	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0002	1722	44	1	5	36	0	2	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0003	1722	41	4	5	31	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0004	1722	27	18	4	1	1	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0005	1722	21	0	0	17	0	4	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0006	1722	20	0	3	7	1	9	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0007	1722	17	2	12	0	2	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0008	1722	11	0	10	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	1/0	a0009	1722	9	5	2	0	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/1	a0010	1722	8	0	2	4	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0011	1722	8	0	2	6	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0012	1722	6	0	1	0	2	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0013	1722	6	4	0	2	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0014	1722	5	0	0	2	2	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0015	1722	4	0	0	4	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0016	1722	4	4	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0017	1722	4	4	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0018	1722	3	3	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0019	1722	3	3	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0020	1722	2	0	0	2	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0021	1722	2	0	0	2	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0022	1722	2	0	0	2	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0023	1722	2	0	0	0	1	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0024	1722	2	0	1	0	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0025	1722	2	2	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0026	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0027	1722	1	0	0	0	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0028	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0029	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0030	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0031	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0032	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0033	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0034	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0035	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0036	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0037	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0038	765	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756