JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LY75_chr2_159798355_159909756	0/0	a0039	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0040	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0041	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0042	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0043	1722	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0044	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0045	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0046	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0047	1722	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	a0048	1722	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY86_chr6_6583720_6659982	1/1	a0001	162	407	83	70	188	18	46	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	a0002	162	13	12	1	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	a0003	162	3	3	0	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	a0004	162	1	0	1	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY96_chr8_73986392_74034079	0/1	a0001	160	302	80	59	119	14	29	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	1/0	a0002	160	4	1	1	0	0	1	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	a0003	160	3	0	3	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	a0004	121	3	3	0	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	a0005	35	1	0	0	1	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	a0006	160	1	0	1	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY9_chr1_160791174_160833255	0/0	a0001	655	255	63	34	120	11	27	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	1/1	a0002	655	109	13	25	55	5	9	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0003	655	13	12	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0004	655	5	0	1	0	0	4	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0005	655	3	3	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0006	254	2	0	0	2	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0007	655	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0008	655	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0009	655	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0010	655	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0011	655	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0012	655	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	a0013	655	1	0	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LYAR_chr4_4262701_4295154	1/1	a0001	379	375	83	68	165	17	40	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0002	379	46	2	1	39	0	4	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0003	379	6	0	5	0	1	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0004	379	3	0	0	3	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0005	379	2	2	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0006	379	1	0	1	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0007	379	1	0	1	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0008	379	1	1	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	a0009	379	1	0	0	1	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYG1_chr2_99279238_99306197	1/1	a0001	194	350	82	80	138	10	38	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	a0002	194	4	4	0	0	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG2_chr2_99237246_99260666	1/1	a0001	212	420	82	80	200	10	46	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	a0002	212	2	2	0	0	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	a0003	212	2	2	0	0	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	a0004	80	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	a0005	212	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYL1_chr19_13094033_13107858	1/1	a0001	280	348	85	76	125	14	46	copy fasta	LYL1	chr19	13094033	13107858