JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LYL1_chr19_13094033_13107858	0/0	a0002	280	14	14	0	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	a0003	280	3	1	2	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	a0004	280	1	0	0	1	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYNX1_chr8_142766202_142782202	1/1	a0001	116	440	89	80	205	18	46	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	a0002	116	3	3	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	a0003	116	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYN_chr8_55874835_56019169	1/1	a0001	512	288	86	50	102	16	32	copy fasta	LYN	chr8	55874835	56019169
LYPD1_chr2_132638286_132675205	1/1	a0001	141	352	96	56	160	12	26	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	a0002	141	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	a0003	141	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD2_chr8_142745150_142757532	1/0	a0001	125	285	75	53	116	15	25	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/1	a0002	125	102	15	13	59	1	13	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0003	125	3	3	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0004	123	2	2	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0005	125	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0006	125	1	1	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0007	125	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	a0008	125	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD3_chr19_43455787_43470608	1/1	a0001	346	439	90	73	210	16	48	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	a0002	346	9	7	2	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	a0003	346	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	a0004	346	1	0	1	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD4_chr19_41832074_41849683	1/1	a0001	246	413	80	65	207	17	42	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	a0002	246	10	2	7	0	0	1	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	a0003	246	2	2	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	a0004	246	1	0	0	1	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	a0005	246	1	0	0	0	1	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	a0006	246	1	0	0	0	0	1	copy fasta	LYPD4	chr19	41832074	41849683
LYPD5_chr19_43790927_43807447	1/0	a0001	251	189	40	29	103	6	10	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/1	a0002	251	137	46	27	32	7	24	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0003	251	96	5	24	58	3	6	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0004	249	2	2	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0005	251	1	0	0	1	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0006	251	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0007	251	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	a0008	251	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD6B_chr2_149033699_149220262	1/1	a0001	207	261	72	50	103	8	26	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	a0002	207	2	2	0	0	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	a0003	207	1	0	0	1	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6_chr2_149325587_149479138	1/1	a0001	171	230	86	54	54	8	26	copy fasta	LYPD6	chr2	149325587	149479138
LYPD8_chr1_248734415_248760759	0/1	a0001	237	334	51	64	168	16	34	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	1/0	a0002	237	27	24	2	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0003	237	6	0	2	0	2	2	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0004	11	3	3	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0005	26	1	1	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0006	237	1	1	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0007	237	1	0	0	0	0	1	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	a0008	232	1	0	0	0	0	1	copy fasta	LYPD8	chr1	248734415	248760759
LYPLA1_chr8_54041367_54106947	1/1	a0001	230	287	69	60	116	10	30	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	a0002	230	16	16	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947