JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LYPLA1_chr8_54041367_54106947	0/0	a0003	230	3	3	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA2_chr1_23786145_23800539	1/1	a0001	231	384	90	82	162	16	32	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLAL1_chr1_219168878_219217858	0/1	a0001	237	331	69	61	151	18	31	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	1/0	a0002	237	16	14	1	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	a0003	237	9	9	0	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	a0004	237	1	0	0	0	0	1	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	a0005	237	1	0	0	1	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYRM1_chr16_20895771_20930006	1/1	a0001	122	381	93	62	168	16	40	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	a0002	122	1	1	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM2_chr6_89627224_89643747	1/0	a0001	88	327	74	51	158	16	27	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/1	a0002	88	42	11	7	8	2	13	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	a0003	88	24	0	8	16	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	a0004	88	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM4_chr6_5103419_5265950	1/1	a0001	91	156	13	33	73	10	25	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	a0002	91	130	71	19	33	4	3	copy fasta	LYRM4	chr6	5103419	5265950
LYRM7_chr5_131165944_131210428	1/1	a0001	104	297	93	66	98	10	28	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	a0002	104	3	3	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM9_chr17_27873358_27898365	1/1	a0001	78	393	90	70	173	18	40	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	a0002	78	1	0	0	1	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYSET_chr14_93180317_93193463	0/1	a0001	163	428	86	80	197	18	46	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	a0002	90	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSMD1_chr1_151154748_151170902	1/1	a0001	227	333	95	69	113	18	36	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	a0002	227	9	0	0	9	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	a0003	227	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	a0004	227	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD2_chr15_51718011_51742655	1/1	a0001	215	398	86	79	172	18	41	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	a0002	215	24	0	1	22	0	1	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	a0003	215	7	7	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	a0004	215	4	4	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	a0005	215	1	1	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD3_chr5_90510626_90534584	0/0	a0001	306	402	89	68	193	16	36	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	a0002	306	5	4	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	a0003	306	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	a0004	306	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	a0005	306	1	0	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD4_chr15_99722405_99738437	1/1	a0001	296	202	68	27	81	6	18	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0002	296	145	3	29	80	9	24	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0003	296	58	3	20	31	1	3	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0004	296	20	16	4	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0005	296	8	3	2	0	0	3	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0006	296	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0007	296	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0008	296	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	a0009	296	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYST_chr1_235656041_235871906	1/1	a0001	3801	183	41	48	59	9	24	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0002	3801	17	14	3	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0003	3801	8	7	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0004	3801	5	2	3	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0005	3801	4	4	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0006	3801	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906