JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LYST_chr1_235656041_235871906	0/0	a0007	3801	2	0	0	2	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0008	3801	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0009	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0010	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0011	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0012	3801	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0013	3801	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0014	3801	1	0	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0015	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0016	3801	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0017	3801	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0018	3801	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0019	3801	1	0	0	0	1	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0020	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	a0021	3801	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYVE1_chr11_10551966_10573665	1/1	a0001	322	370	77	74	162	16	39	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	a0002	322	17	13	2	0	0	2	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	a0003	322	5	5	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	a0004	322	1	0	0	0	0	1	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	a0005	322	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYZL1_chr10_29284070_29316232	1/0	a0001	148	293	59	60	144	5	24	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/1	a0002	148	121	22	16	64	4	14	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	a0003	148	26	10	4	5	3	4	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	a0004	148	1	1	0	0	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	a0005	148	1	0	0	1	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL2_chr10_30606779_30634753	1/1	a0001	148	442	86	81	211	17	45	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	a0002	148	11	10	1	0	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	a0003	148	1	0	0	1	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	a0004	148	1	0	0	0	0	1	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	a0005	148	1	0	0	0	1	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL4_chr3_42392083_42415610	1/1	a0001	146	395	96	64	165	18	50	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	a0002	131	1	0	0	1	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL6_chr17_35929518_35948713	0/1	a0001	148	316	72	48	156	12	27	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	a0002	148	93	21	17	41	2	12	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	a0003	148	3	3	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	a0004	148	2	0	0	1	0	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	a0005	148	1	0	1	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZ_chr12_69343381_69359234	1/1	a0001	148	443	91	73	216	15	46	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	a0002	148	4	0	3	0	1	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	a0003	148	2	2	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	a0004	148	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LZIC_chr1_9921293_9948391	1/1	a0001	190	368	86	62	170	10	38	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	a0002	190	2	0	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZTFL1_chr3_45818316_45847119	1/1	a0001	299	351	78	60	161	14	36	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	a0002	299	28	2	1	19	2	4	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	a0003	299	9	8	1	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	a0004	299	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	a0005	299	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTR1_chr22_20977297_21004032	1/1	a0001	840	441	97	84	197	17	44	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	a0002	840	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032