JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LZTR1_chr22_20977297_21004032	0/0	a0003	468	1	0	0	0	1	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	a0004	840	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	a0005	840	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	a0006	840	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTS1_chr8_20241165_20308963	1/1	a0001	596	374	90	75	150	14	43	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0002	596	22	2	0	16	2	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0003	596	3	3	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0004	596	2	0	0	0	2	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0005	596	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0006	596	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0007	596	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0008	596	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	a0009	596	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS2_chr10_100994808_101012833	1/1	a0001	669	393	94	75	161	17	44	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0002	669	2	0	0	0	0	2	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0003	669	2	0	0	2	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0004	669	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0005	669	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0006	669	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0007	669	1	0	1	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0008	669	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0009	669	1	0	0	0	1	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0010	669	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0011	669	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	a0012	669	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS3_chr20_3157617_3178549	1/1	a0001	673	438	98	81	196	18	43	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0002	673	2	0	0	0	0	2	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0003	673	2	0	0	2	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0004	673	1	0	0	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0005	673	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0006	673	1	0	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	a0007	673	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
M1AP_chr2_74552883_74653330	0/0	a0000	0	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	1/1	a0001	530	233	84	43	86	2	16	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	a0002	530	6	6	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	a0003	530	5	0	0	5	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	a0004	530	3	2	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M6PR_chr12_8935361_8954645	1/1	a0001	277	341	89	72	131	10	37	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	a0002	278	58	0	4	43	4	7	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	a0003	278	4	0	0	4	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	a0004	277	1	1	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
MAB21L1_chr13_35468789_35481689	1/1	a0001	359	466	100	72	224	18	50	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L2_chr4_150577151_150589693	1/1	a0001	359	415	94	64	201	12	42	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	a0002	359	1	0	0	1	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L3_chr1_116106399_116143149	1/1	a0001	362	408	97	74	187	13	35	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	a0002	362	2	0	0	0	1	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	a0003	362	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	a0004	362	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L4_chr2_240881048_240901156	0/1	a0001	447	323	35	57	178	16	36	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0002	447	74	33	7	25	1	8	copy fasta	MAB21L4	chr2	240881048	240901156