JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MACF1_chr1_39199695_39492138	0/0	a0007	7555	6	0	0	5	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0008	7555	5	4	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0009	7555	4	3	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0010	7555	4	0	0	4	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0011	7555	3	3	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0012	7555	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0013	7555	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0014	7555	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0015	7555	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0016	7555	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0017	7555	2	0	1	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0018	7555	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0019	7555	2	0	1	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0020	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	1/0	a0021	7555	1	0	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0022	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0023	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0024	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0025	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0026	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0027	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0028	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0029	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0030	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0031	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0032	7555	1	0	0	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0033	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0034	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0035	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0036	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0037	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0038	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0039	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0040	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0041	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0042	7555	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0043	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0044	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0045	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0046	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0047	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0048	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0049	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0050	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0051	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0052	7555	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0053	7555	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACIR_chr5_103253763_103283660	1/1	a0001	206	358	96	61	152	12	35	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	a0002	206	1	0	0	0	0	1	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	a0003	206	1	0	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660