JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MACO1_chr1_25425897_25505209	1/1	a0001	664	282	88	48	98	14	32	copy fasta	MACO1	chr1	25425897	25505209
MACROD1_chr11_63993558_64171113	1/1	a0001	325	196	69	35	54	4	32	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	a0002	325	1	1	0	0	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	a0003	325	1	0	1	0	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD2_chr20_13990516_16058197	0/0	a0001	448	15	11	3	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	a0002	448	8	5	2	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	a0003	448	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROH2A1_chr5_135329381_135404231	0/0	a0001	372	220	80	42	72	4	22	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A2_chr10_70047846_70117282	1/1	a0001	372	370	88	60	171	12	37	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	a0002	372	2	0	0	1	0	1	copy fasta	MACROH2A2	chr10	70047846	70117282
MAD1L1_chr7_1810795_2237945	1/0	a0001	718	198	83	36	48	10	20	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/1	a0002	718	64	4	16	33	4	6	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	a0003	718	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	a0004	718	1	0	0	1	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD2L1BP_chr6_43630840_43645941	1/1	a0001	274	365	97	66	145	14	41	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	a0002	274	3	0	0	0	0	3	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	a0003	274	1	1	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	a0004	274	1	0	0	1	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1_chr4_120050623_120071848	1/1	a0001	205	380	89	62	170	16	41	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	a0002	205	2	1	0	0	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L2_chr1_11669480_11686148	1/1	a0001	211	428	99	74	189	14	50	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	a0002	43	1	1	0	0	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	a0003	211	1	0	0	1	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MADCAM1_chr19_491486_510343	0/0	a0001	398	90	22	12	46	2	8	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/1	a0002	406	66	15	18	26	1	5	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0003	406	46	1	12	17	4	12	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0004	382	32	11	1	19	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0005	390	31	30	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	1/0	a0006	382	21	2	11	0	4	3	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0007	398	13	0	0	9	0	4	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0008	390	12	0	0	11	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0009	398	12	0	9	0	1	2	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0010	398	5	0	0	5	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0011	398	4	0	3	0	1	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0012	398	3	3	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0013	390	3	0	2	0	1	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0014	406	3	0	0	3	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0015	406	3	0	0	0	0	3	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0016	398	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0017	390	2	0	0	2	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0018	406	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0019	406	2	1	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0020	390	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0021	406	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0022	406	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0023	406	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0024	390	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0025	398	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0026	398	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0027	406	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343