JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MADCAM1_chr19_491486_510343	0/0	a0028	390	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0029	398	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	a0030	390	1	0	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADD_chr11_47265133_47335031	1/0	a0001	1650	168	37	35	59	11	25	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/1	a0002	1650	125	37	19	58	2	8	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0003	1650	27	1	7	8	2	9	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0004	1650	9	9	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0005	1650	4	4	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0006	765	3	1	2	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0007	1650	1	1	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0008	1650	1	0	0	0	1	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0009	1650	1	0	0	0	0	1	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0010	1650	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0011	1650	1	0	0	0	0	1	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0012	1650	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0013	1650	1	0	1	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	a0014	1650	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MAEA_chr4_1284891_1345137	1/1	a0001	396	385	92	74	156	16	45	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	a0002	396	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	a0003	396	1	0	0	0	0	1	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	a0004	396	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEL_chr1_166984280_167027214	1/1	a0001	434	280	53	56	127	13	29	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	a0002	434	123	35	16	60	1	11	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	a0003	434	4	4	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	a0004	434	1	0	0	1	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAF1_chr8_144099461_144112611	0/1	a0001	256	293	63	68	113	13	35	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	1/0	a0002	256	43	33	6	1	1	1	copy fasta	MAF1	chr8	144099461	144112611
MAFA_chr8_143423064_143435732	0/1	a0001	352	390	71	76	186	12	44	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	1/0	a0002	353	23	20	2	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0003	352	16	1	0	11	4	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0004	351	9	4	5	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0005	352	2	0	0	0	0	2	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0006	352	2	0	0	2	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0007	352	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0008	352	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0009	349	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	a0010	352	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFB_chr20_40680848_40694236	1/1	a0001	323	427	88	70	207	16	44	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	a0002	323	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFF_chr22_38196994_38221507	1/1	a0001	164	385	95	74	154	14	46	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	a0002	164	2	0	0	2	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	a0003	164	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFG_chr17_81913270_81932735	1/1	a0001	162	356	86	60	160	10	38	copy fasta	MAFG	chr17	81913270	81932735
MAFK_chr7_1525702_1548043	1/1	a0001	156	377	89	70	160	12	44	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	a0002	156	3	3	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAF_chr16_79588838_79605737	1/1	a0001	403	454	95	74	218	16	49	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	a0002	403	5	0	5	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	a0003	403	4	3	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	a0004	399	2	0	0	2	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	a0005	403	1	0	0	0	0	1	copy fasta	MAF	chr16	79588838	79605737