Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD40CL_chr17_50756030_50772518	0/0	a0004	114	1	0	0	1	0	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40_chr17_50688198_50712914	1/1	a0001	368	349	73	68	154	16	36	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	a0002	369	22	7	5	10	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	a0003	368	14	0	1	13	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	a0004	368	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	a0005	368	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	a0006	368	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD42_chr11_83188712_83253971	1/1	a0001	527	333	82	57	147	16	29	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0002	527	8	4	4	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0003	527	4	0	0	4	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0004	453	1	0	1	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0005	527	1	0	0	0	0	1	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0006	527	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0007	527	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	a0008	527	1	0	0	1	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD44_chr2_196981662_197315780	1/1	a0001	993	107	60	16	12	4	13	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	a0002	993	7	2	4	0	0	1	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD45_chr1_173603336_173674851	1/1	a0001	266	277	23	51	172	10	19	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	a0002	266	59	56	3	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	a0003	266	4	3	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	a0004	266	1	0	0	0	0	1	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	a0005	266	1	0	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD46_chr8_100515772_100564759	1/1	a0001	228	398	92	76	164	14	50	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	a0002	228	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	a0003	228	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD49_chr11_94488984_94504578	1/1	a0001	239	453	92	78	213	18	50	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	a0002	239	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	a0003	239	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	a0004	239	1	0	0	1	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD50_chr4_124659048_124717732	1/1	a0001	1429	373	87	68	172	12	32	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0002	1429	2	1	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0003	1429	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0004	1429	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0005	1429	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0006	1429	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0007	1429	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0008	1429	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	a0009	1429	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD52_chr12_56232807_56263384	1/1	a0001	1076	247	82	45	86	10	22	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0002	1076	17	0	4	11	2	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0003	1076	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0004	1076	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0005	1076	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0006	1076	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0007	1076	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0008	1076	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0009	1076	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	a0010	1076	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD53_chr2_70973630_70990499	1/1	a0001	530	301	47	46	159	7	40	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0002	530	49	8	7	26	3	5	copy fasta	ANKRD53	chr2	70973630	70990499