JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAF_chr16_79588838_79605737	0/0	a0006	403	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	a0007	403	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAGEA10_chrX_152128310_152143577	0/1	a0001	369	261	61	50	110	9	30	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	1/0	a0002	369	12	10	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	a0003	369	7	7	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	a0004	369	1	0	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	a0005	369	1	0	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA11_chrX_149707060_149722268	1/1	a0001	429	299	66	51	142	10	28	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	a0002	429	10	9	1	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	a0003	429	2	2	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	a0004	429	1	1	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA12_chrX_152728757_152742669	1/1	a0001	314	310	69	58	144	7	30	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	a0002	314	8	8	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	a0003	314	2	0	0	0	2	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	a0004	314	1	1	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	a0005	220	1	0	0	1	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA1_chrX_153174284_153188880	1/1	a0001	309	177	46	42	57	10	20	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	a0002	309	94	10	15	66	0	3	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	a0003	309	70	23	8	27	1	11	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	a0004	301	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	a0005	307	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA2B_chrX_152709628_152723607	0/0	a0001	314	232	53	39	110	5	25	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	a0002	314	17	5	4	7	1	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	a0003	314	6	6	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	a0004	148	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	a0005	314	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2_chrX_152744863_152758842	0/0	a0001	314	169	34	30	69	7	29	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	a0002	314	16	5	4	6	1	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	a0003	314	4	4	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	a0004	110	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	a0005	314	1	0	1	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA3_chrX_152693794_152707347	1/1	a0001	314	160	30	32	69	11	16	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	a0002	314	27	2	1	20	2	2	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	a0003	314	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	a0004	314	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	a0005	314	1	1	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA4_chrX_151907889_151930170	0/0	a0001	317	169	37	22	90	6	14	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	1/1	a0002	317	157	25	30	77	5	18	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0003	316	5	4	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0004	317	5	4	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0005	316	3	3	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0006	316	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0007	85	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0008	232	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0009	317	1	0	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	a0010	317	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA6_chrX_152761136_152774689	0/0	a0000	0	2	0	0	2	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	1/1	a0001	314	144	39	27	52	7	17	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0002	314	24	9	6	8	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0003	99	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689