JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEA6_chrX_152761136_152774689	0/0	a0004	148	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0005	314	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0006	224	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0007	314	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0008	217	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0009	191	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0010	169	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0011	314	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0012	265	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0013	314	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0014	84	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	a0015	45	1	0	0	0	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA8_chrX_149876183_149890825	1/1	a0001	318	273	62	50	114	11	34	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	a0002	318	10	10	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	a0003	318	2	2	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	a0004	318	1	1	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	a0005	318	1	0	0	1	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA9B_chrX_149576653_149592459	0/0	a0001	315	186	37	34	82	11	22	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0002	315	26	3	7	15	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0003	315	14	13	0	0	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0004	315	10	9	1	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0005	326	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0006	107	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0007	315	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0008	315	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0009	107	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	a0010	107	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9_chrX_149776930_149792737	0/0	a0001	315	225	39	49	103	11	23	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0002	315	31	23	3	1	0	4	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0003	315	7	0	0	7	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0004	315	2	0	0	0	0	2	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0005	315	2	2	0	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0006	285	1	0	1	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0007	315	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0008	186	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0009	113	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0010	315	1	0	0	0	0	1	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	a0011	162	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEB10_chrX_27802990_27828014	1/1	a0001	347	167	26	33	78	9	19	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0002	347	33	20	3	8	0	2	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0003	347	31	9	15	2	2	3	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0004	347	13	13	0	0	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0005	347	2	0	0	0	0	2	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0006	347	2	0	0	2	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0007	45	1	0	0	1	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	a0008	347	1	0	0	1	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB16_chrX_35793342_35808772	0/1	a0001	271	185	42	24	91	8	19	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	1/0	a0002	324	98	32	20	30	3	12	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	a0003	129	2	0	0	2	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	a0004	120	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772