JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEB16_chrX_35793342_35808772	0/0	a0005	324	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	a0006	324	1	0	0	0	0	1	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB17_chrX_16162481_16176464	1/1	a0001	336	277	70	61	109	9	26	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	a0002	336	2	0	0	0	0	2	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	a0003	80	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	a0004	217	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	a0005	80	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB18_chrX_26133343_26145736	0/1	a0001	343	255	56	41	128	6	23	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	1/0	a0002	343	65	16	20	18	5	5	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	a0003	343	2	2	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	a0004	343	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	a0005	343	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	a0006	106	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	a0007	97	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB1_chrX_30242146_30257040	1/1	a0001	347	329	68	56	162	13	28	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	a0002	347	4	4	0	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	a0003	347	2	2	0	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	a0004	347	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	a0005	243	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	a0006	347	1	0	1	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB2_chrX_30210563_30225089	0/1	a0001	319	256	71	51	98	11	24	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	1/0	a0002	319	50	1	7	37	0	4	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0003	319	5	4	1	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0004	319	3	0	0	3	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0005	20	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0006	313	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0007	319	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0008	319	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0009	203	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	a0010	319	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB3_chrX_30225657_30242495	0/0	a0001	346	147	20	27	75	7	18	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	1/0	a0002	346	92	11	5	70	0	5	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/1	a0003	346	91	44	28	9	6	3	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0004	346	1	1	0	0	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0005	346	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0006	209	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0007	310	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0008	252	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0009	346	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0010	346	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	a0011	74	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB4_chrX_30237000_30249187	1/1	a0001	346	325	71	57	151	13	31	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0002	346	8	6	2	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0003	346	6	0	0	6	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0004	346	2	0	0	2	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0005	181	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0006	346	1	0	0	0	0	1	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0007	108	1	1	0	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	a0008	108	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB5_chrX_26211169_26223270	1/1	a0001	275	332	78	60	151	11	30	copy fasta	MAGEB5	chrX	26211169	26223270