JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEB6B_chrX_26155601_26167410	0/1	a0001	407	257	52	37	135	7	25	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	1/0	a0002	407	68	17	20	17	6	7	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0003	407	5	5	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0004	407	5	4	1	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0005	407	2	0	0	2	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0006	272	1	0	0	1	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0007	407	1	1	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	a0008	407	1	1	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6_chrX_26187440_26200646	0/0	a0000	0	1	0	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	1/1	a0001	407	259	57	47	123	9	21	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0002	365	34	3	5	17	1	8	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0003	407	10	9	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0004	407	5	4	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0005	407	3	0	0	0	1	2	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0006	177	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0007	407	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0008	407	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0009	365	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0010	407	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0011	407	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0012	407	1	0	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	a0013	407	1	0	0	0	0	1	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEC1_chrX_141898894_141914374	0/0	a0001	1212	22	0	7	11	0	4	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0002	1177	15	0	3	10	1	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0003	1142	14	0	4	10	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0004	1177	10	0	1	9	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0005	1142	9	2	3	0	3	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0006	1177	7	0	0	7	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0007	1212	7	0	1	6	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0008	1177	5	0	0	3	0	2	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0009	1212	5	0	0	5	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0010	1212	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0011	1247	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0012	1177	4	0	0	3	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0013	1212	4	0	3	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0014	1212	4	4	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0015	1177	4	0	1	2	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0016	1212	4	0	0	3	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0017	1142	4	0	2	0	2	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0018	1177	4	0	4	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0019	1247	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0020	1212	4	2	2	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0021	1142	4	1	1	1	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0022	1107	4	0	0	3	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	1/0	a0023	1142	4	0	0	2	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0024	1142	3	2	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0025	1142	3	0	0	2	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0026	1142	3	0	3	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0027	1387	3	3	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0028	1212	3	2	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374