JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEC1_chrX_141898894_141914374	0/0	a0129	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0130	1212	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0131	1071	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0132	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0133	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0134	1247	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0135	1212	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0136	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0137	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0138	1142	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0139	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0140	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0141	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0142	1317	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0143	1247	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0144	1212	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0145	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0146	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0147	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0148	1142	1	0	0	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0149	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0150	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0151	1107	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0152	1212	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0153	1212	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0154	1142	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0155	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0156	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0157	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0158	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0159	1247	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0160	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0161	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0162	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0163	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0164	1212	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0165	1072	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0166	1107	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0167	1142	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0168	1119	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0169	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0170	1142	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0171	1107	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0172	1142	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0173	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0174	1282	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0175	1072	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0176	1072	1	0	0	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0177	1142	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0178	1247	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374