JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEF1_chr3_184705364_184717064	1/0	a0001	307	220	37	33	130	1	18	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/1	a0002	308	185	28	43	72	12	29	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0003	308	15	15	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0004	309	7	4	3	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0005	307	7	1	1	4	1	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0006	307	6	0	0	6	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0007	307	5	5	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0008	308	3	3	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0009	308	2	2	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0010	308	2	2	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0011	33	1	1	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0012	307	1	0	0	1	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0013	307	1	0	0	0	0	1	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	a0014	308	1	0	0	1	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEH1_chrX_55447127_55458566	1/1	a0001	219	303	73	60	126	11	31	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	a0002	91	1	0	0	1	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEL2_chr15_23638549_23652867	1/1	a0001	1249	337	55	72	158	15	35	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0002	1249	24	7	2	13	2	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0003	529	11	1	1	8	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0004	1249	9	9	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0005	1249	7	7	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0006	1249	5	1	0	2	1	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0007	1249	5	5	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0008	1249	4	0	0	4	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0009	1249	3	0	0	3	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0010	1242	2	0	0	0	0	2	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0011	1249	2	1	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0012	1249	2	0	0	0	0	2	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0013	1249	2	0	0	2	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0014	1249	2	0	0	2	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0015	1249	2	2	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0016	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0017	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0018	1249	1	0	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0019	529	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0020	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0021	1249	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0022	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0023	1249	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0024	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0025	1242	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0026	1249	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0027	529	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0028	1242	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0029	1249	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0030	1249	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0031	1249	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0032	1249	1	0	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0033	1249	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	a0034	1249	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867