Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD53_chr2_70973630_70990499	0/0	a0003	530	33	10	18	0	1	4	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0004	530	12	5	3	4	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0005	530	9	8	1	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0006	528	8	8	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0007	530	5	0	0	5	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0008	530	5	3	2	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0009	530	4	0	0	4	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0010	530	4	4	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0011	530	3	0	2	0	1	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0012	530	3	0	0	3	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0013	526	2	0	0	2	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0014	530	2	0	0	0	2	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0015	530	2	0	0	2	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0016	530	1	0	1	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0017	530	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0018	530	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0019	530	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0020	530	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0021	530	1	0	0	0	0	1	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0022	530	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	a0023	530	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD54_chr22_37825855_37849334	1/1	a0001	300	382	93	76	153	14	44	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	a0002	300	1	1	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	a0003	300	1	0	0	1	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD55_chr5_56094680_56238330	1/1	a0001	614	215	76	48	62	5	22	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0002	614	81	8	9	46	6	12	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0003	614	3	3	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0004	614	2	0	2	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0005	614	2	0	0	1	1	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0006	614	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0007	614	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0008	614	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0009	614	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	a0010	614	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD60_chr20_58211126_58233653	0/1	a0001	345	174	22	54	57	11	29	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0002	346	93	2	14	71	3	3	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0003	345	78	32	5	40	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	1/0	a0004	345	68	25	1	32	3	6	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0005	346	22	1	0	17	0	4	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0006	346	5	0	0	5	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0007	345	3	3	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0008	345	2	0	1	0	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0009	199	2	2	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0010	345	2	2	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0011	345	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0012	345	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0013	345	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0014	345	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0015	345	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	a0016	112	1	0	1	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653