JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGI1_chr3_65348526_66043918	0/0	a0001	1462	64	33	17	3	4	7	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0002	1463	21	6	6	3	2	4	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0003	1462	8	8	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0004	1464	5	5	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0005	1462	3	3	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0006	1463	1	0	1	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0007	1462	1	0	0	0	0	1	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	a0008	1458	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI2_chr7_78012055_79458667	0/0	a0001	1455	39	29	8	0	2	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	a0002	1455	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI3_chr1_113385515_113690923	1/1	a0001	1481	233	26	50	123	10	22	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	a0002	1481	1	0	0	0	1	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	a0003	1481	1	0	0	0	1	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	a0004	1481	1	0	0	1	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGIX_chrX_49157758_49173774	0/0	a0000	0	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	1/1	a0001	334	226	54	51	81	11	27	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0002	334	12	10	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0003	334	8	6	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0004	334	4	4	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0005	334	3	0	0	0	0	3	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0006	334	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0007	334	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0008	303	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0009	334	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0010	271	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	a0011	67	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGOHB_chr12_10599193_10618609	1/1	a0001	148	380	96	78	148	16	40	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOH_chr1_53221900_53243518	1/1	a0001	146	438	98	72	216	12	38	copy fasta	MAGOH	chr1	53221900	53243518
MAGT1_chrX_77820747_77900435	1/1	a0001	335	258	62	40	116	10	28	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	a0002	151	1	0	0	0	1	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	a0003	229	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAG_chr19_35287161_35318807	1/1	a0001	626	392	84	67	182	18	39	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0002	626	23	1	6	14	0	2	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0003	626	5	5	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0004	626	4	4	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0005	626	2	0	0	2	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0006	626	2	2	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0007	626	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0008	626	1	0	0	0	0	1	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0009	626	1	0	1	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0010	626	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0011	626	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	a0012	626	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAIP1_chr2_199950582_199969117	1/1	a0001	291	421	88	66	209	16	40	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	a0002	291	2	0	2	0	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	a0003	291	1	0	0	1	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAJIN_chr11_64933230_64977108	1/1	a0001	216	382	93	60	178	16	33	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	a0002	216	1	1	0	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	a0003	216	1	0	0	0	0	1	copy fasta	MAJIN	chr11	64933230	64977108
MAK16_chr8_33480182_33506262	0/1	a0001	300	214	51	38	99	9	16	copy fasta	MAK16	chr8	33480182	33506262