JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAK16_chr8_33480182_33506262	1/0	a0002	300	169	29	28	86	1	24	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	a0003	301	15	11	2	0	2	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	a0004	300	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	a0005	300	1	0	0	1	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK_chr6_10757723_10843539	1/1	a0001	648	258	88	58	79	7	24	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0002	648	8	0	8	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0003	648	2	1	0	0	1	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0004	648	1	0	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0005	648	1	1	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0006	648	1	0	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	a0007	648	1	0	0	1	0	0	copy fasta	MAK	chr6	10757723	10843539
MAL2_chr8_119203363_119250673	1/1	a0001	176	333	61	64	155	16	35	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	a0002	176	48	29	2	13	0	4	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	a0003	176	1	0	0	0	0	1	copy fasta	MAL2	chr8	119203363	119250673
MALL_chr2_110078870_110120822	1/0	a0001	153	335	90	64	134	14	32	copy fasta	MALL	chr2	110078870	110120822
MALRD1_chr10_19043801_19739478	0/0	a0001	2156	11	3	1	5	0	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0002	2156	5	2	1	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0003	2156	5	1	4	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0004	2156	4	0	0	4	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0005	2156	4	1	0	2	1	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0006	2156	4	0	0	1	1	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0007	2156	4	0	2	1	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0008	2156	3	0	1	0	0	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0009	2156	3	1	2	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0010	2156	3	0	0	3	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0011	2156	3	0	1	0	1	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0012	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0013	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0014	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0015	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0016	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0017	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0018	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0019	2156	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0020	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0021	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0022	2156	2	1	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0023	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0024	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0025	2156	2	1	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0026	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0027	2156	2	0	2	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0028	2156	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0029	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0030	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0031	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/1	a0032	2156	1	0	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0033	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0034	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0035	2156	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478