JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MALRD1_chr10_19043801_19739478	0/0	a0086	2156	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0087	2156	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0088	2156	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0089	2156	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0090	2156	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0091	2156	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0092	2156	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0093	2156	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0094	2156	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0095	2156	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0096	2156	1	0	0	0	1	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	a0097	2156	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALSU1_chr7_23294339_23316729	1/1	a0001	234	431	95	74	199	16	45	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	a0002	234	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	a0003	234	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	a0004	234	1	0	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALT1_chr18_58666465_58759477	1/1	a0001	824	395	84	69	187	14	39	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	a0002	824	6	0	1	0	0	5	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	a0003	824	2	2	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	a0004	824	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	a0005	824	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	a0006	813	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MAL_chr2_95020708_95058992	1/1	a0001	153	324	70	64	146	8	34	copy fasta	MAL	chr2	95020708	95058992
MAMDC2_chr9_70038848_70231972	0/1	a0001	686	230	47	50	102	8	22	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0002	685	49	0	4	39	1	5	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	1/0	a0003	686	40	29	7	0	1	2	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0004	686	8	7	1	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0005	686	2	0	2	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0006	686	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0007	686	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0008	685	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0009	685	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0010	686	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0011	685	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0012	685	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0013	686	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0014	686	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0015	686	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	a0016	686	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC4_chr9_136847346_136865799	0/1	a0001	1137	213	63	33	85	4	27	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	1/0	a0002	1137	65	4	31	16	5	8	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0003	1137	12	0	2	10	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0004	1137	10	0	3	0	1	6	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0005	1137	7	0	0	7	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0006	1137	6	0	4	0	2	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0007	1137	4	0	0	4	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0008	1137	3	0	3	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0009	1137	3	0	0	3	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0010	1137	2	2	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0011	1137	2	1	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799