JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAMDC4_chr9_136847346_136865799	0/0	a0012	1137	2	2	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0013	49	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0014	1137	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0015	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0016	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0017	1137	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0018	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0019	1137	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0020	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0021	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0022	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0023	1137	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0024	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0025	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0026	1137	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0027	1137	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0028	492	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0029	1137	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0030	1132	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0031	1137	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0032	1137	1	0	0	0	0	1	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	a0033	1137	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAML1_chr5_179727822_179782283	1/1	a0001	1016	258	60	48	122	4	22	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0002	1016	84	19	18	33	10	4	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0003	1016	3	1	1	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0004	1016	3	3	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0005	1016	3	1	2	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0006	1009	2	2	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0007	1016	2	0	2	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0008	1016	2	0	0	0	0	2	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0009	1016	1	0	1	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0010	1016	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	a0011	1016	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML2_chr11_95971598_96348195	0/1	a0001	1153	149	38	28	53	6	23	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	1/0	a0002	1156	22	15	2	0	0	4	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0003	1153	18	2	9	4	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0004	1154	11	6	2	0	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0005	1151	5	5	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0006	1151	4	2	2	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0007	1153	3	3	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0008	1153	2	2	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0009	1153	2	2	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0010	1156	2	0	1	0	1	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0011	1156	2	0	2	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0012	1153	1	0	0	0	1	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0013	1153	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0014	1153	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0015	1156	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0016	1154	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0017	1153	1	0	0	0	0	1	copy fasta	MAML2	chr11	95971598	96348195