JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAML2_chr11_95971598_96348195	0/0	a0018	1153	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0019	1153	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0020	1153	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	a0021	1153	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML3_chr4_139711753_140159184	0/1	a0001	1133	79	25	22	12	6	13	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0002	1136	21	15	0	6	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0003	1135	13	6	4	1	0	2	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0004	1133	11	2	2	2	1	4	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0005	1134	8	7	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0006	1137	6	2	2	0	1	1	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0007	1130	4	3	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0008	1137	2	0	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0009	1126	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0010	1133	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0011	1133	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0012	1134	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0013	1136	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	1/0	a0014	1138	1	0	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0015	1133	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	a0016	1132	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAMLD1_chrX_150358317_150519173	1/1	a0001	774	184	46	30	76	7	23	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0002	774	17	17	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0003	774	9	0	1	8	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0004	774	9	0	7	0	2	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0005	774	2	2	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0006	774	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0007	774	1	0	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0008	773	1	0	0	1	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0009	774	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	a0010	774	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMSTR_chr19_48707725_48724725	1/1	a0001	415	380	94	64	160	14	46	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	a0002	415	5	4	1	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	a0003	415	1	0	1	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAN1A1_chr6_119172205_119354761	1/1	a0001	653	341	89	60	142	13	35	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	a0002	653	5	0	2	0	1	2	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	a0003	653	2	0	0	2	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	a0004	653	1	1	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	a0005	653	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A2_chr1_117362449_117533872	1/1	a0001	641	368	87	57	172	12	38	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	a0002	641	1	1	0	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	a0003	641	1	0	1	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1B1_chr9_137081985_137114183	0/0	a0001	699	340	51	68	161	17	43	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0002	699	33	31	1	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0003	699	9	0	8	0	0	1	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0004	699	4	4	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0005	699	3	3	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0006	699	2	0	0	2	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0007	699	2	0	0	2	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0008	699	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0009	699	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183