JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAN1B1_chr9_137081985_137114183	0/0	a0010	699	1	0	0	0	1	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0011	699	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0012	699	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0013	699	1	0	1	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0014	699	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0015	699	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0016	699	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0017	699	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	a0018	699	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1C1_chr1_25611791_25789450	1/1	a0001	630	246	77	51	94	4	18	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	a0002	630	2	2	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	a0003	630	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	a0004	630	1	0	1	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN2A1_chr5_109684927_109874625	1/1	a0001	1144	198	61	56	48	12	19	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0002	1143	79	4	15	44	2	14	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0003	1144	8	0	0	8	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0004	1144	3	3	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0005	1144	2	0	0	2	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0006	1144	2	2	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0007	1143	1	0	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0008	1143	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0009	1144	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	a0010	1144	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A2_chr15_90898302_90927579	0/0	a0001	1150	263	32	46	163	1	21	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	1/1	a0002	1150	78	18	23	6	13	16	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0003	1150	14	7	1	0	0	6	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0004	1150	11	9	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0005	1150	10	9	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0006	1150	8	0	3	0	2	3	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0007	1150	7	7	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0008	1150	7	0	0	7	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0009	1150	5	4	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0010	1150	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0011	1150	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0012	1150	2	0	0	2	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0013	1150	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0014	1150	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0015	1150	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0016	1150	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0017	1150	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0018	1150	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	a0019	1150	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2B1_chr19_12641512_12671742	1/0	a0001	1011	221	30	28	127	4	31	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0002	1011	28	1	12	7	4	4	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0003	1011	26	3	10	6	4	3	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0004	1011	19	17	2	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0005	1011	18	2	9	2	1	4	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0006	1011	13	13	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0007	1011	10	10	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0008	1011	8	7	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742