JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAN2B1_chr19_12641512_12671742	0/0	a0009	1011	8	0	3	0	5	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0010	1011	6	0	4	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0011	1011	5	0	0	5	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0012	1011	4	3	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0013	1011	3	3	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0014	1011	2	0	0	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0015	1011	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0016	1011	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0017	1011	1	0	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0018	1011	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0019	1011	1	0	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/1	a0020	1011	1	0	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0021	1011	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0022	1011	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	a0023	1011	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B2_chr4_6570189_6628362	0/0	a0001	1009	133	5	22	89	3	14	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/1	a0002	1009	126	25	25	56	5	14	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0003	1009	12	11	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0004	1009	9	1	7	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0005	1009	6	6	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0006	1009	5	3	0	1	0	1	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0007	1009	5	1	1	2	1	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	1/0	a0008	1009	5	3	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0009	1009	4	4	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0010	1009	4	0	4	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0011	1009	4	4	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0012	1009	3	0	0	0	1	2	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0013	1009	3	3	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0014	1009	3	3	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0015	1009	3	2	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0016	1009	3	3	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0017	1009	2	0	1	0	0	1	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0018	1009	2	0	2	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0019	1009	2	0	0	2	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0020	1009	2	0	0	2	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0021	1009	2	2	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0022	1009	2	2	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0023	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0024	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0025	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0026	1009	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0027	1009	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0028	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0029	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0030	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0031	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0032	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0033	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0034	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0035	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362