JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAN2B2_chr4_6570189_6628362	0/0	a0036	1009	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0037	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0038	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0039	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0040	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0041	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0042	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0043	1009	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	a0044	1009	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2C1_chr15_75350792_75373607	1/1	a0001	1040	328	73	65	147	13	28	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0002	1040	36	0	7	27	0	2	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0003	1040	3	2	1	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0004	1040	2	2	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0005	1040	2	0	0	1	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0006	1040	2	2	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0007	1040	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0008	1040	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0009	1040	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0010	1040	1	0	0	0	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0011	877	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0012	1040	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0013	1040	1	0	0	0	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0014	1040	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	a0015	1040	1	0	1	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MANBAL_chr20_37284655_37322260	1/1	a0001	85	272	78	48	96	16	32	copy fasta	MANBAL	chr20	37284655	37322260
MANBA_chr4_102625770_102765968	0/0	a0001	879	146	46	35	46	5	14	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/1	a0002	879	78	11	18	29	5	14	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	1/0	a0003	879	33	18	3	8	1	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0004	879	13	0	3	8	1	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0005	879	5	5	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0006	879	1	0	0	0	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0007	879	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0008	879	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0009	879	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	a0010	879	1	0	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANEAL_chr1_37788847_37806133	1/1	a0001	457	425	87	69	209	14	44	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0002	458	5	0	0	5	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0003	457	2	0	0	2	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0004	457	2	2	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0005	457	1	0	1	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0006	457	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0007	272	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	a0008	457	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEA_chr6_95572535_95614452	1/1	a0001	462	354	71	64	181	8	28	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0002	462	25	0	8	15	1	1	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0003	462	14	9	3	0	2	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0004	462	10	6	0	0	1	3	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0005	462	2	0	0	0	2	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0006	462	1	0	1	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0007	462	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452