JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP1A_chr15_43512608_43536611	0/0	a0008	2803	2	2	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0009	2803	2	0	1	0	1	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0010	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0011	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0012	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0013	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0014	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0015	2803	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0016	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0017	2803	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0018	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0019	2803	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0020	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0021	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0022	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0023	2803	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0024	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0025	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0026	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0027	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0028	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0029	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0030	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0031	2803	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0032	2803	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1B_chr5_72102475_72214565	0/1	a0001	2468	289	77	49	119	10	33	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	1/0	a0002	2468	22	1	16	3	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0003	2468	5	0	5	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0004	2468	4	4	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0005	2468	4	0	0	4	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0006	2468	4	3	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0007	2468	3	3	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0008	2468	2	1	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0009	2468	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0010	2472	1	0	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0011	2468	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0012	2468	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0013	2468	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0014	2468	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0015	2468	1	0	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0016	2468	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	a0017	2468	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1LC3A_chr20_34553718_34565345	1/1	a0001	121	408	90	70	194	12	40	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3B2_chr12_116554381_116581606	1/1	a0001	125	424	82	61	217	18	44	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	a0002	125	12	11	1	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	a0003	125	8	6	2	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	a0004	125	1	0	0	1	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	a0005	125	1	1	0	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B_chr16_87387336_87409774	1/1	a0001	125	419	96	84	179	16	42	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	a0002	125	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774