JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP1LC3C_chr1_241990490_242004098	1/1	a0001	147	445	90	76	216	17	44	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	a0002	147	4	1	0	0	1	2	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	a0003	147	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	a0004	147	1	1	0	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	a0005	147	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1S_chr19_17714480_17739513	1/1	a0001	1059	181	49	43	58	8	21	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0002	1059	34	7	15	1	3	8	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0003	1059	25	0	10	3	3	9	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0004	1059	20	18	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0005	492	11	2	3	2	0	4	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0006	1059	10	10	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0007	1059	2	0	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0008	1059	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0009	1059	1	0	1	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0010	1059	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0011	1059	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0012	1059	1	1	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0013	1059	1	1	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	a0014	1059	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP2K1_chr15_66381912_66496544	1/1	a0001	393	372	92	72	152	16	38	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K2_chr19_4085321_4129122	1/1	a0001	400	326	83	74	111	10	46	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	a0002	400	3	0	0	3	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	a0003	400	1	1	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K3_chr17_21279711_21320232	1/1	a0001	347	362	87	68	145	10	50	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	a0002	347	3	3	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	a0003	347	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K4_chr17_12015877_12148828	1/1	a0001	399	321	90	45	140	12	32	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	a0002	399	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K5_chr15_67537703_67812114	1/1	a0001	448	276	80	42	115	11	26	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	a0002	448	1	0	0	1	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	a0003	448	1	0	0	0	1	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K6_chr17_69409697_69558865	1/1	a0001	334	260	78	44	92	12	32	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K7_chr19_7898877_7919478	1/1	a0001	419	410	98	79	166	18	47	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	a0002	434	18	0	0	18	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	a0003	419	2	0	0	2	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	a0004	412	2	0	1	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	a0005	434	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	a0006	419	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2_chr2_209419047_209739112	1/1	a0001	1827	84	39	10	22	3	8	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0002	1827	43	15	4	22	1	1	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0003	1827	9	7	1	0	0	1	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0004	1827	3	2	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0005	1827	2	0	0	0	0	2	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0006	1827	1	0	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0007	1827	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0008	1827	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0009	1827	1	0	0	1	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0010	1827	1	0	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0011	1827	1	0	0	1	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	a0012	1827	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112