JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP3K10_chr19_40186426_40220575	1/1	a0001	954	387	92	69	168	18	38	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0002	954	5	5	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0003	950	1	1	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0004	954	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0005	954	1	0	1	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0006	954	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0007	954	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	a0008	954	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K11_chr11_65592757_65619221	1/1	a0001	847	380	94	69	161	18	36	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0002	847	3	2	1	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0003	847	2	0	0	2	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0004	847	2	2	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0005	847	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0006	847	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0007	847	1	0	0	0	0	1	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0008	843	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	a0009	847	1	0	0	0	0	1	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K12_chr12_53474669_53504458	1/1	a0001	892	323	75	67	121	14	44	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	a0002	892	2	2	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	a0003	892	1	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	a0004	892	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	a0005	892	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K13_chr3_185358136_185494094	1/1	a0001	966	265	70	41	116	6	30	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0002	965	4	4	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0003	966	2	0	2	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0004	966	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0005	966	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0006	966	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0007	966	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0008	966	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0009	966	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	a0010	966	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K14_chr17_45258119_45322020	1/1	a0001	947	327	89	55	139	14	28	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	a0002	947	3	0	3	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	a0003	947	3	1	0	2	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	a0004	947	2	0	2	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	a0005	947	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K15_chrX_19355059_19520508	0/0	a0000	0	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/1	a0001	1313	84	6	16	45	5	11	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	1/0	a0002	1313	59	41	10	5	0	2	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0003	1313	3	3	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0004	1313	2	2	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0005	187	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0006	1313	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0007	1313	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0008	1313	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0009	1313	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0010	1313	1	0	1	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0011	1313	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0012	1313	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508