JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP3K20_chr2_173070846_173273015	0/0	a0007	800	2	0	0	2	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0008	800	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K21_chr1_233322724_233390148	1/0	a0001	1036	218	63	32	90	6	26	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0002	1036	102	14	13	64	3	8	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/1	a0003	1036	15	3	4	0	4	3	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0004	1036	14	0	4	9	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0005	1036	5	5	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0006	1036	2	1	0	0	1	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0007	1036	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0008	1036	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0009	1036	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0010	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0011	1036	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0012	1036	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0013	1036	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0014	1036	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0015	1036	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0016	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0017	1036	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0018	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0019	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0020	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0021	1036	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	a0022	1036	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K2_chr2_127293668_127392975	1/1	a0001	619	318	85	52	131	6	42	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	a0002	619	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	a0003	619	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K3_chr17_63617417_63701305	1/1	a0001	626	179	84	39	32	8	14	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	a0002	626	1	0	1	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K4_chr6_160986769_161122380	0/0	a0001	1607	296	73	56	130	10	27	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0002	1608	14	3	1	6	0	4	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	1/0	a0003	1608	10	0	3	4	2	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0004	1607	6	6	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0005	1607	3	0	0	3	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0006	1604	2	2	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0007	1607	2	2	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0008	1608	2	0	1	0	0	1	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0009	1607	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0010	1607	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0011	1586	1	1	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0012	1607	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/1	a0013	1607	1	0	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0014	1613	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	a0015	1608	1	1	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K5_chr6_136552046_136797477	1/1	a0001	1374	152	62	29	49	2	8	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0002	1375	2	0	0	0	0	2	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0003	1374	2	1	1	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0004	1374	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0005	1374	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0006	1374	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477