JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP3K5_chr6_136552046_136797477	0/0	a0007	1374	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0008	1374	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	a0009	1374	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K6_chr1_27350184_27371961	1/0	a0001	1288	161	44	35	61	4	16	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/1	a0002	1288	131	10	14	85	3	18	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0003	1288	47	2	17	16	7	5	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0004	1288	32	22	6	0	3	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0005	1288	8	4	4	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0006	1288	6	5	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0007	1288	4	0	4	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0008	1288	3	0	0	0	0	3	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0009	1288	3	0	0	3	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0010	1288	2	2	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0011	1288	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0012	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0013	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0014	1288	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0015	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0016	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0017	1288	1	0	0	0	1	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0018	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0019	1288	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0020	1288	1	0	0	0	0	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0021	1288	1	0	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0022	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0023	1288	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0024	1288	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	a0025	1288	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K7CL_chr21_29125644_29180887	1/1	a0001	142	404	91	72	187	10	42	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	a0002	142	1	1	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	a0003	138	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7_chr6_90508579_90592072	1/1	a0001	606	343	84	66	139	12	40	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	a0002	442	1	0	0	1	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K8_chr10_30429184_30466833	1/1	a0001	467	372	93	71	158	12	36	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0002	467	8	0	0	8	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0003	467	2	0	0	2	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0004	467	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0005	467	1	0	1	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0006	467	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	a0007	467	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K9_chr14_70717526_70814513	1/1	a0001	1104	361	78	64	173	13	31	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0002	1104	2	0	0	2	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0003	1104	2	0	2	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0004	1104	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0005	1104	1	0	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0006	1104	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0007	1104	1	0	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0008	1104	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0009	1104	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0010	1104	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513