JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP3K9_chr14_70717526_70814513	0/0	a0011	1104	1	0	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	a0012	1104	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP4K1_chr19_38582641_38622953	1/1	a0001	821	334	80	66	139	8	39	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0002	821	3	0	0	3	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0003	821	3	0	0	1	0	2	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0004	821	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0005	821	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0006	821	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0007	821	1	1	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0008	821	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0009	821	1	1	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0010	821	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	a0011	821	1	0	0	0	0	1	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K2_chr11_64779918_64808214	1/1	a0001	820	357	88	56	157	14	40	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0002	820	3	2	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0003	820	2	0	0	2	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0004	820	2	0	0	0	0	2	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0005	820	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0006	820	1	0	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0007	820	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	a0008	820	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K3_chr2_39244266_39442285	1/1	a0001	894	229	74	44	73	6	30	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	a0002	894	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	a0003	894	1	0	0	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	a0004	894	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K4_chr2_101692707_101899690	1/1	a0001	1384	308	92	54	118	10	32	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	a0002	1384	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	a0003	1384	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K5_chr14_50413521_50537569	1/0	a0001	846	222	78	50	76	3	14	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	a0002	846	8	0	5	1	1	1	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	a0003	846	3	0	0	3	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/1	a0004	846	3	1	0	0	0	1	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	a0005	846	2	2	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	a0006	846	1	0	1	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	a0007	846	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4_chr3_47845695_48021416	1/0	a0001	2296	96	20	18	41	4	12	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/1	a0002	2296	68	11	16	36	2	2	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0003	2296	13	12	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0004	2296	9	4	1	3	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0005	2296	7	7	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0006	2296	6	0	1	0	0	5	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0007	2296	4	4	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0008	2296	3	2	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0009	2296	3	3	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0010	2296	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0011	2296	2	0	0	2	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0012	2296	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0013	2296	2	0	0	0	0	2	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0014	2296	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0015	2296	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416