JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP4_chr3_47845695_48021416	0/0	a0016	2296	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0017	2296	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0018	2296	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0019	2296	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0020	2296	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0021	2296	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0022	2296	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0023	2296	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0024	2296	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0025	2296	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0026	2296	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0027	2296	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	a0028	2296	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP6D1_chr3_183810922_183830577	1/1	a0001	199	458	91	81	221	18	45	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	a0002	199	2	1	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	a0003	199	1	0	0	0	0	1	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	a0004	190	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6_chr11_75581918_75674038	0/0	a0001	813	207	48	31	107	4	17	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	1/0	a0002	813	172	35	25	82	6	23	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/1	a0003	813	4	0	0	2	1	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0004	813	2	0	0	2	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0005	813	1	0	0	0	1	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0006	813	1	0	1	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0007	813	1	0	1	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0008	813	1	1	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	a0009	813	1	0	0	1	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP7D1_chr1_36151160_36185849	1/1	a0001	840	251	56	44	103	13	33	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0002	839	33	0	7	24	1	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0003	840	30	2	3	24	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0004	840	18	15	3	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0005	840	10	0	9	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0006	386	10	1	2	6	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0007	840	5	4	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0008	840	5	0	0	4	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0009	840	3	0	2	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0010	840	3	0	0	3	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0011	840	2	0	2	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0012	840	1	0	0	0	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0013	386	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0014	845	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0015	840	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0016	840	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0017	840	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0018	840	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	a0019	386	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D2_chrX_20001713_20121907	1/1	a0001	773	104	2	23	60	4	13	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0002	773	97	62	19	8	3	5	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0003	773	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0004	339	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0005	773	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907