JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP7D2_chrX_20001713_20121907	0/0	a0006	689	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0007	689	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0008	773	1	0	0	0	0	1	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0009	531	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0010	773	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	a0011	773	1	0	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D3_chrX_136211814_136256400	0/1	a0001	876	136	17	25	75	5	13	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	1/0	a0002	876	115	30	22	42	6	14	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0003	876	15	14	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0004	876	2	0	0	2	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0005	876	2	2	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0006	876	1	0	0	0	0	1	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0007	876	1	0	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0008	876	1	1	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0009	442	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0010	332	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	a0011	876	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7_chr6_136337734_136555422	0/1	a0001	749	111	23	23	58	1	5	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	1/0	a0002	749	103	21	13	60	1	7	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0003	749	16	2	5	9	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0004	748	6	6	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0005	743	3	0	0	3	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0006	749	3	3	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0007	749	2	0	0	2	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0008	749	2	2	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0009	749	1	0	1	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	a0010	749	1	1	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP9_chr4_155337658_155381965	0/0	a0001	647	191	53	26	103	1	8	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	1/1	a0002	647	72	2	24	22	5	17	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0003	647	69	4	10	44	3	8	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0004	647	46	18	0	26	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0005	647	18	4	9	3	1	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0006	647	11	11	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0007	647	2	0	0	0	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0008	617	2	0	0	2	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0009	647	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0010	647	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0011	647	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0012	647	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	a0013	647	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAPK10_chr4_86005405_86365053	1/1	a0001	464	170	68	30	46	6	18	copy fasta	MAPK10	chr4	86005405	86365053
MAPK11_chr22_50258713_50275380	1/1	a0001	364	412	91	79	179	16	45	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0002	191	9	1	3	5	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0003	364	2	0	1	0	0	1	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0004	364	2	2	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0005	364	1	0	1	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0006	364	1	0	0	1	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	a0007	364	1	0	0	1	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK12_chr22_50247901_50266683	1/1	a0001	367	386	83	75	165	18	43	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0002	367	48	9	11	27	0	1	copy fasta	MAPK12	chr22	50247901	50266683