JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAPK12_chr22_50247901_50266683	0/0	a0003	367	2	2	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0004	367	2	2	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0005	367	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0006	367	1	1	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0007	367	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0008	367	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0009	367	1	1	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	a0010	367	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK13_chr6_36125513_36149521	1/1	a0001	365	424	96	80	186	14	46	copy fasta	MAPK13	chr6	36125513	36149521
MAPK14_chr6_36022808_36116236	1/1	a0001	360	341	90	58	155	10	26	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	a0002	360	1	0	0	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK15_chr8_143711349_143727458	0/1	a0001	544	286	45	62	128	10	40	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0002	544	35	24	4	4	1	2	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0003	544	20	15	1	0	0	4	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0004	544	14	1	4	8	1	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0005	544	10	0	0	10	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0006	544	5	0	1	4	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0007	544	5	5	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0008	544	4	4	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0009	191	3	2	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0010	544	2	0	0	0	0	2	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0011	544	2	0	2	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0012	544	2	1	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0013	544	2	0	2	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0014	544	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0015	544	1	0	0	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0016	544	1	0	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0017	544	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0018	544	1	0	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0019	544	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	a0020	544	1	0	0	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK1IP1L_chr14_55046647_55075194	1/1	a0001	245	376	98	72	150	16	38	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1_chr22_21754657_21872645	1/1	a0001	360	341	92	63	142	10	32	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	a0002	361	7	2	3	0	0	2	copy fasta	MAPK1	chr22	21754657	21872645
MAPK3_chr16_30109105_30128220	1/1	a0001	379	386	82	69	177	14	42	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	a0002	379	1	0	0	1	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	a0003	379	1	0	1	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK4_chr18_50555087_50736826	1/1	a0001	587	203	76	32	64	7	22	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	a0002	587	96	7	18	54	5	12	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	a0003	587	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	a0004	587	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	a0005	587	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK6_chr15_52014219_52072375	1/1	a0001	721	348	77	66	149	11	43	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	a0002	721	7	1	4	0	1	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	a0003	721	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK7_chr17_19373498_19388544	1/1	a0001	816	348	83	68	138	12	45	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0002	816	4	4	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0003	816	2	0	0	2	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0004	816	2	0	0	2	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0005	816	1	0	0	0	0	1	copy fasta	MAPK7	chr17	19373498	19388544